PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn245201
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 319aa    MW: 35872 Da    PI: 6.9677
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn245201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.71.3e-3153167389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssas 83 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ +                   ++++      s+ss+  
  Achn245201  53 GGKDRHSKVCTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKDEIDELPPLqmpnfgpnyqalvasdlgVFDPN------SQSSK-- 143
                 78*************************************************************77755554433333333311111......11111.. PP

         TCP  84 nsssg......................k 89 
                     +                      +
  Achn245201 144 ----EgvkistnvkwkdqlglarsnfwD 167
                 ....122122222222222222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-2954179IPR005333Transcription factor, TCP
PROSITE profilePS5136931.59354112IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MITTSREEDF APKQEGHTVE KNSKASSSAT ISTSTSWSRF KDPRIVRVSR TFGGKDRHSK  60
VCTVKGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKDEID ELPPLQMPNF  120
GPNYQALVAS DLGVFDPNSQ SSKEGVKIST NVKWKDQLGL ARSNFWDSDS NLRDKSKEVA  180
TDERENWTLR NEEEKQESGG ISPNFFPKSN HLAIPGFLNN VMPYNSSFYR LEPSSFSFIS  240
PQTEDNQNFI NIGSQPYFPS NSIEFDPKQI NHFQMLSSST SRNPMSNALA PTLYSTSQSM  300
KPLQLMSMAE NNDEFPPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1859113155Putative transcription factor PCF6
5zkt_B7e-1859113155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108887.11e-121transcription factor TCP13-like
RefseqXP_028108888.11e-121transcription factor TCP13-like
RefseqXP_028108889.11e-121transcription factor TCP13-like
SwissprotQ9FME31e-46TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A2R6RUG70.0A0A2R6RUG7_ACTCH; Transcription factor like
STRINGVIT_14s0068g00330.t014e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]