PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn243571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 500aa    MW: 56401.6 Da    PI: 4.4982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn243571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1372e-421414993374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +  +a++ ++ ela+ +  r+ e +sp g++++Rl +++ +    +  +         +  ++s   s++  aa+k+f++++P+ k++h+taN a
  Achn243571 141 HLLKAYGQAMEMEQRELAEVIRRRIMEKVSPVGETLERLGFHLFQSVGMTEEE---------HLLQES---SKNFKAAFKAFYQIFPYGKLAHFTANLA 227
                 788888999*********************************99877655444.........222333...67788999******************** PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkp 198
                 Ileav ++ e++Hi+Dfd+++G+QW++++++ as +    +lR+T ++s     ++ l e  +rL + A++ g++++ + + +++ ++++  ++++ + 
  Achn243571 228 ILEAVPENiETIHIVDFDVGEGVQWAPMIESVASLQ---KTLRLTLIKS----GEDLLGEATRRLYDHARSSGLNMKVEEVgIEDLVSEI--KKMKNRG 317
                 *****9999************************975...56********....99************************98333334444..4443333 PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk......vvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.eerikv 285
                   +E la n+++ l ++   ++ ++s+ +e+L+  k+l ++      ++v+ + +a     + + +   f   l++y al +s+e +++    e+ri +
  Achn243571 318 grREWLAFNCMVGLPHMR--KGRSRSHVREFLRKAKELLANsennegIIVIGDGDAGErlrSCSGYGSFFEGYLSHYQALCESMEWNVAVSLaEARIAM 414
                 55***************7..78888889*********9665445555999999997653434456666677789**********999987656****** PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                 E  ++++ i++  + ++ e      ++++ ++   e G++  +l++++  +a+ ++r+ +   y v    ++++++vl W+++pLv vS Wr
  Achn243571 415 ESLFVAPFISSPFCLRKWE------EVREGSDLYAEIGLNGQRLTKENLVEAQEMVREGE-SLYVVTiggQNNNEMVLEWRGNPLVRVSTWR 499
                 ***********99999988......566678999************************99.45998888999*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.726113477IPR005202Transcription factor GRAS
PfamPF035146.8E-40141499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MMQPELLEQL SWPYHNIINS SLDLEFSFSF SNTEDSYSSG ISSDQFLFAD EFVEYLMSGD  60
KFQVTDGDYM EGLEPILGGD QLGDVCRWLR EDESEGSFPS PNQCTEPEDI WSPSQSTKSS  120
EVSLTLPGGD MDIDSHLSLG HLLKAYGQAM EMEQRELAEV IRRRIMEKVS PVGETLERLG  180
FHLFQSVGMT EEEHLLQESS KNFKAAFKAF YQIFPYGKLA HFTANLAILE AVPENIETIH  240
IVDFDVGEGV QWAPMIESVA SLQKTLRLTL IKSGEDLLGE ATRRLYDHAR SSGLNMKVEE  300
VGIEDLVSEI KKMKNRGGRR EWLAFNCMVG LPHMRKGRSR SHVREFLRKA KELLANSENN  360
EGIIVIGDGD AGERLRSCSG YGSFFEGYLS HYQALCESME WNVAVSLAEA RIAMESLFVA  420
PFISSPFCLR KWEEVREGSD LYAEIGLNGQ RLTKENLVEA QEMVREGESL YVVTIGGQNN  480
NEMVLEWRGN PLVRVSTWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1417240036270GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077641.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6QZ350.0A0A2R6QZ35_ACTCH; Nodulation-signaling pathway 2 protein
STRINGEOY071071e-161(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-20GRAS family protein