PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn235351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SBP
Protein Properties Length: 216aa    MW: 23873.1 Da    PI: 9.978
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn235351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP34.94.1e-1165905378
                TT--SS--S-STTTT-------S--- CS
         SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78
                 efD ekrsCr+rL++hn+rrrk q+
  Achn235351 65 GEFDGEKRSCRKRLDGHNRRRRKLQP 90
                59*********************886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1036123.14E-86493IPR004333Transcription factor, SBP-box
PfamPF031101.7E-56687IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVPNQLGYKV VIMSLVQPKV RVWHTHLNLD PSSIGLGFGC VSAILKPRSW LSEANSNGFA  60
SNVAGEFDGE KRSCRKRLDG HNRRRRKLQP ESFYMTSGNF FSNHQASNYN GRDKQLPFLL  120
GSDPEKSNQA DAEVPICQRI VNNRGPAETG SQKVLSDGLA QPINSKCGFS LLLTHATRTS  180
VTSSSHLMPQ GMIKLNQPIG LHFDLIQYSC SRQME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17087KRSCRKRLDGHNRRRRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107377.11e-38squamosa promoter-binding-like protein 16
RefseqXP_028107378.11e-38squamosa promoter-binding-like protein 16
RefseqXP_028107379.11e-38squamosa promoter-binding-like protein 16
RefseqXP_028107380.11e-38squamosa promoter-binding-like protein 16
TrEMBLA0A2R6RZ393e-40A0A2R6RZ39_ACTCH; Squamosa promoter-binding-like protein
STRINGVIT_14s0068g01780.t011e-18(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-10SBP family protein