PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232671
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 89aa    MW: 9810.83 Da    PI: 7.5099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-09751244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT+   + + +a + + ++   +W  Ia+ +g g+t +++k ++
       Achn232671  7 GSWTAKQNKAFEKALAVYDKDttdRWYNIAKAVG-GKTVEEVKRHY 51
                     89********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.357459IPR017884SANT domain
SMARTSM007176.7E-7557IPR001005SANT/Myb domain
SuperFamilySSF466896.86E-13762IPR009057Homeodomain-like
PfamPF002491.6E-6751IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6761IPR009057Homeodomain-like
CDDcd001675.55E-7851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSRGSGSWT AKQNKAFEKA LAVYDKDTTD RWYNIAKAVG GKTVEEVKRH YEILVEDIKH  60
IEAGQVPFPN YRTAGGCSQG STSDEDQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-38276378RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594282.18e-48protein RADIALIS-like 1 isoform X1
SwissprotF4JVB83e-40RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2R6RHD71e-58A0A2R6RHD7_ACTCH; Protein RADIALIS-like
STRINGXP_010088924.11e-45(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-42RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]