PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn231641
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 463aa    MW: 48440.4 Da    PI: 7.0959
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn231641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.74.3e-38702092108
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 
                 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl  a+pai ++tgt++++a+++  ++s +ss+s+ s++           
  Achn231641  70 PAAKRPTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLHHAEPAIFAATGTGTIPANFStLNVSLRSSGSTISAPpsksaphsfhg 168
                 6789*****************************************************************999888888888884444466666777777 PP

         TCP  89 .......................kaaksaakskksqksaasal 108
                                        +++++++  +++q+++++++
  Achn231641 169 alalahhpyeegfshmlgfqhqlHQQQQQQ--QQQQQQQSQHQ 209
                 888888888888888877775432222222..22222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.73876130IPR017887Transcription factor TCP subgroup
PfamPF036346.3E-4076210IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MELSDVHNNN KQPNTTATAT ASSHRAVNFD SRSGAGGGAA SGAQPPQLVD ASLAIATRSE  60
QEITVAAAPP AAKRPTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL  120
HHAEPAIFAA TGTGTIPANF STLNVSLRSS GSTISAPPSK SAPHSFHGAL ALAHHPYEEG  180
FSHMLGFQHQ LHQQQQQQQQ QQQQQSQHQQ LLTADQIADA MPGGGDGGSN SAENYLRKRF  240
REDLFKEESQ SQQGDASAGP SSPSNKQFKG GLQLPKQQDQ AGPSSSMLRH TNMMPPGMWA  300
VAPAPSSGVG STFWMLPVTA AGGSGAGGSG QTISLAAAPT SGAGPSDQPQ VWPFAAAAPA  360
AASGVTLQAP LHFMSRSSIP GNLEFQGGRA GSLQLGSMLM QQQPSQHLGL GMPEPNLGML  420
AALSAYSRGG LNMNSEQNNP LEHHQHQPQT TDSGEDDPNS SQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088914.10.0transcription factor TCP8-like
RefseqXP_028088915.10.0transcription factor TCP8-like
TrEMBLA0A2R6Q6K70.0A0A2R6Q6K7_ACTCH; Transcription factor like
STRINGEOX971601e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-76TCP family protein