PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn229151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 303aa    MW: 33009.7 Da    PI: 7.9192
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn229151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.71.6e-3454110358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAas+GghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr+++
   Achn229151  54 VVTYKECLKNHAASMGGHAVDGCGEFMPSPAANqADPTSLKCAACGCHRNFHRRDPD 110
                  689**************************999989*******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.2E-2955109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3156108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2257107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.3357108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.97E-17179252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28184252IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-25191247IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDISTATVTA CVKTPEAESE APTRIQVQPG KPLCFTNGVL KRHHPHHVNS PPAVVTYKEC  60
LKNHAASMGG HAVDGCGEFM PSPAANQADP TSLKCAACGC HRNFHRRDPD DPPPLTPAAQ  120
NLIEYQPLHR HHPPPHNRVG HSSPNSASPP PISSSYYPSA PHMLLALSGG LAAAPPPENN  180
PSITPPSSNG RKRFRTKFTQ DQKDKMHEFA ERLEWKMQRR DEELISDFCG EIGVEKGVFK  240
VWMHNNKHTL GKRDSSKENG IGNANSLENT PTHNHHNHHD QNFNHDSVSA HVVATNGSSS  300
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-191922491875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102760.11e-104zinc-finger homeodomain protein 9-like
SwissprotQ9LHF02e-72ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A2R6RKA40.0A0A2R6RKA4_ACTCH; Zinc-finger homeodomain protein
STRINGXP_010257380.11e-101(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-38homeobox protein 30
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]