PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 462aa    MW: 51684 Da    PI: 6.9689
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.72.2e-552803831101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  Achn225011 280 QLQSFWTNQhqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 378
                 89*****999999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr+el
  Achn225011 379 PREEL 383
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045734.8E-1482130IPR007653Signal peptidase 22kDa subunit
SuperFamilySSF471135.03E-32279374IPR009072Histone-fold
PfamPF008086.2E-21302365IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.7E-37303380IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006465Biological Processsignal peptide processing
GO:0005787Cellular Componentsignal peptidase complex
GO:0016021Cellular Componentintegral component of membrane
GO:0008233Molecular Functionpeptidase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MIPNKVEHIH NSQSLMIRET QALTQSSNNI STDTYSDSQL RDKTNFYSVY ACTTQQCIRA  60
RGSISSSIPL RRLTTSHPPL SKVFAFLAAE YETPKNSLNQ VSLWDGIIPS KEHAKFSIHT  120
TNKYRFTDQG ILSNSKTRPD GITWTYGSNN SGNTSRLSHF SRSLVHHIGL FVGKELEDGE  180
GVVRSEVVHV LPFEPPQDRM DQQGHGHPQG AGVVGSAAQL HYGTREYEPN QGNGTPNQGP  240
VVTSVGASLS PSQPAGVQLA QHQLAYQHIH QQQLQQLQQQ LQSFWTNQHQ EIEKVTDFKN  300
HSLPLARIKK IMKADEDVRM ISAEAPIVFA RACEMFILEL TLRSWNHTEE NKRRTLQKND  360
IAAAITRTDI FDFLVDIVPR EELKDEELAS IPRGTIPVGV PTDAYPYYYM PTQHSPQAGT  420
PGMMMGKPVM DPVLYAQQPH PYMAPQMWPQ APQEPQSPSD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-58288380395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352358RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098953.11e-147nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_028098954.11e-147nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ8L4B25e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A2R6RDA00.0A0A2R6RDA0_ACTCH; Nuclear transcription factor Y subunit C-9 like
STRINGVIT_14s0128g00250.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-81nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]