PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 462aa    MW: 51684 Da    PI: 6.9689
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.72.2e-552803831101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  Achn225011 280 QLQSFWTNQhqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 378
                 89*****999999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr+el
  Achn225011 379 PREEL 383
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045734.8E-1482130IPR007653Signal peptidase 22kDa subunit
SuperFamilySSF471135.03E-32279374IPR009072Histone-fold
PfamPF008086.2E-21302365IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.7E-37303380IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006465Biological Processsignal peptide processing
GO:0005787Cellular Componentsignal peptidase complex
GO:0016021Cellular Componentintegral component of membrane
GO:0008233Molecular Functionpeptidase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MIPNKVEHIH NSQSLMIRET QALTQSSNNI STDTYSDSQL RDKTNFYSVY ACTTQQCIRA  60
RGSISSSIPL RRLTTSHPPL SKVFAFLAAE YETPKNSLNQ VSLWDGIIPS KEHAKFSIHT  120
TNKYRFTDQG ILSNSKTRPD GITWTYGSNN SGNTSRLSHF SRSLVHHIGL FVGKELEDGE  180
GVVRSEVVHV LPFEPPQDRM DQQGHGHPQG AGVVGSAAQL HYGTREYEPN QGNGTPNQGP  240
VVTSVGASLS PSQPAGVQLA QHQLAYQHIH QQQLQQLQQQ LQSFWTNQHQ EIEKVTDFKN  300
HSLPLARIKK IMKADEDVRM ISAEAPIVFA RACEMFILEL TLRSWNHTEE NKRRTLQKND  360
IAAAITRTDI FDFLVDIVPR EELKDEELAS IPRGTIPVGV PTDAYPYYYM PTQHSPQAGT  420
PGMMMGKPVM DPVLYAQQPH PYMAPQMWPQ APQEPQSPSD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C2e-39290380294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-39290380294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352358RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659832.11e-139PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X3
SwissprotQ8L4B23e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLF6HYY41e-138F6HYY4_VITVI; Putative uncharacterized protein
STRINGVIT_14s0128g00250.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-81nuclear factor Y, subunit C9