PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn224681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 994aa    MW: 111791 Da    PI: 6.1761
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn224681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.4e-16129203290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 fY++YA++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++              C+a+l++++++ + w vtk++++HnH+++
  Achn224681 129 FYDAYARRVGFSTHVGQYSRTKPDGPIVTWDFACSREIFKRKNVES--------------CNAMLRIERKDPDSWIVTKFVEDHNHSIV 203
                 9***************************************998877..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-13129203IPR004330FAR1 DNA binding domain
PfamPF105515.2E-30335427IPR018289MULE transposase domain
PROSITE profilePS5096611.399612648IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-11614646IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-8623650IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MAAATTTVPS SEYNSERERV LNSSEIRSTK LDLCPNSKNP LDRESERARE GFDLYATDKA  60
AAGMDVGVDG AEGEKREKHG KANISRNMGE KQGMAENSSD REAHNQDDDE NTKLHVGMEF  120
ESEDAAKTFY DAYARRVGFS THVGQYSRTK PDGPIVTWDF ACSREIFKRK NVESCNAMLR  180
IERKDPDSWI VTKFVEDHNH SIVSPRKVHH LRPRRHFAGV TKNLVETVDA PCDVFVSMDG  240
NQVSYHPNRG VRSASPVEMN SAAKSFGPMN YVQPCIRKKT LGRDAQNILN YFKKMQAENP  300
GFYYAIQLDD DNCMTNIFWA DARSRTAYSH FGDAVIFDTM YRPNQFLVPF APFTGVNHHG  360
QMVLFGCALL LDESESSFTW LFRTWLSAMN DQPPVSITTD QDRAIQAAVT QVFPETRHCI  420
CKWHILREGQ ERLAHVYLAH PSFYGELYSC INFSETVEDF ESSWSSLLDR YELRKNEWLQ  480
AVYNARQQWA PVYFRGTFFA ALSSNQGVSS FFDGYVNQQT SIPMFFKQYE RALENSLERE  540
IEADYDTICT MPVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANN IEGDGVVSKF  600
RVAKYEHDHK AYMVMLNMSE MKASCSCQMF EYSGILCKHI LTVFTVTNVL TLPSHYILNR  660
WTRNARICFG SMEHDANNQC IETLTSRFKN LCREAIKYAE EGAIAAETYN AAMTALRDGA  720
RKIADVKKNV AKVTPPSSQG SGSTQEDCNK KTPISTFDMS PPLWPWQDVM PQHFNLNDVG  780
VSIADLNQPT IAPDSVTRDG GPDKPVVLTC FKSMTWVIED KNSTSSKVAL INLKGSDGGY  840
NVEIVVVGLG CLGLCWLCFW CSGDDGDGVG GRVVHCRVAA MVLVMEWQSN FCGGDGYNGG  900
GIVGVVMLQD YSKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSASANR VAVINLKLQD  960
TKATTGETEV KFQVSRDTLG SMLRSMEYIR EQL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099450.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X2
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6RDW30.0A0A2R6RDW3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_13s0047g00330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]