PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn221631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 357aa    MW: 39220.1 Da    PI: 6.8017
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn221631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.12.2e-3642168289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec...eaesssssasnsssg... 88 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+ +ak+ai+el+++      s  s+ e+   e        +n++++   
  Achn221631  42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLISKAKAAIDELAELppwkptS-RSNAEVtisE--------QNQEEDeta 131
                 79**************************************************************7766431.2221222221........222222111 PP

         TCP  89 ....................................k 89 
                                                     +
  Achn221631 132 qfdanalmgenssnflppsmdsdaiadtiksffpigA 168
                 2223335554444444444444444444444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3342208IPR005333Transcription factor, TCP
PROSITE profilePS5136934.26444102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEETHRRRHL HSRRQPPLSR LGLRHAGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LISKAKAAID ELAELPPWKP TSRSNAEVTI  120
SEQNQEEDET AQFDANALMG ENSSNFLPPS MDSDAIADTI KSFFPIGAAA ADSSAVQFQS  180
QDLRLSLQSF QDQTLLHQQQ SQHHGSNDHN EQVIFSGTTG VGYDAPSAAE TSRFQRMITW  240
SDGGYASSCG GGGFVFNSPP LPAPPLFGQN NQFVSQRGPL QSSNTQSIRA WIDQYSIPAA  300
ADHHHHHHLQ NLPMYQSSLS GIGLSGFRIP ARIQGEEEEH DGVSDKPSSA SSDSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1949102154Putative transcription factor PCF6
5zkt_B3e-1949102154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077281.11e-141transcription factor TCP4-like
SwissprotQ9MAH85e-95TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A2R6QCJ70.0A0A2R6QCJ7_ACTCH; Transcription factor like
STRINGPGSC0003DMT4000322691e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-82TCP family protein
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]