PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn214311
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 487aa    MW: 54865.9 Da    PI: 4.5047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn214311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.95.1e-431244852373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL +c ea++ ++++l++ +L rl+e a p+g++ qRl+ y+ + L +   r                   ++  aa+++f++++P+ +f+h++aN+
  Achn214311 124 RHLLKACGEAMEIQNTHLVEVILRRLEEKACPRGSTAQRLVYYLIQWLDEDFDR-------------------KNYEAAFRAFYQIFPYGRFAHFVANS 203
                 89**********************************************999998...................223467899***************** PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                  Ileav ++ er+ i+Dfd+++G+QWp+L++aL s+ +g  +++i  v+ ++ +   s ++ e+t+erL + A++ gv++e   +   ++e l  e+  
  Achn214311 204 SILEAVPEDaERIRIVDFDMGEGVQWPPLIEALGSQHRGVRQIQIVSVKIEDFNsmpSLQSFEKTKERLCEHASSSGVQLEVAEV---DMEGLVSEMKk 299
                 ******8877*************************************999766678899999*******************9998...45555333331 PP

        GRAS 195 ..rvkpgEalaVnlvlqlhrlldesvsles.......erdevLklvkslsPk.vvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eer 282
                   ++ ++E+la n+++ l ++++++ s +        + +  L+  ++++++ ++++ +  +  +   F   f   l   +al++s+e ++p++  e+r
  Achn214311 300 teECGRRECLAFNCMVGLPHMPRQRSSRHVeeflklaQESIGLRSCNGIRSNgILTFGDGQTMSDYRGFGSFFEAQLGRATALLESMEGQIPSHLkEAR 398
                 115566****************6665554422333322334456666787765889999999999**************************9987699* PP

        GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 i +E  ++++ ++++v+ e+ae  er       r rl  +  + + ++s +++++ak l+r+ +s  y +    e+++++vl+  + pLv vS+W
  Achn214311 399 IAMECLFVAPYVSSLVCFEKAE--ERDS-----RGRLpPKIALDARRMSIDTVAEAKELVREGDS-LYWIGtegESENQVVLCFLGSPLVRVSSW 485
                 *********************9..4444.....3333146889999***************9994.487775567899***************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.64797464IPR005202Transcription factor GRAS
PfamPF035141.8E-40124485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MHHPPWSYSS LDEVGFHVLD MDSDCANFGF SYSFISPPIN YESQSFQNLE ESTSSEKQSF  60
DEVEGFLNWM EIESGPSSLC PTEETEGTSP SMSSREASMD VSSPEKPLVF PWEDMALGYE  120
LSIRHLLKAC GEAMEIQNTH LVEVILRRLE EKACPRGSTA QRLVYYLIQW LDEDFDRKNY  180
EAAFRAFYQI FPYGRFAHFV ANSSILEAVP EDAERIRIVD FDMGEGVQWP PLIEALGSQH  240
RGVRQIQIVS VKIEDFNSMP SLQSFEKTKE RLCEHASSSG VQLEVAEVDM EGLVSEMKKT  300
EECGRRECLA FNCMVGLPHM PRQRSSRHVE EFLKLAQESI GLRSCNGIRS NGILTFGDGQ  360
TMSDYRGFGS FFEAQLGRAT ALLESMEGQI PSHLKEARIA MECLFVAPYV SSLVCFEKAE  420
ERDSRGRLPP KIALDARRMS IDTVAEAKEL VREGDSLYWI GTEGESENQV VLCFLGSPLV  480
RVSSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1113028426191Protein SCARECROW
5b3h_A2e-1113028425190Protein SCARECROW
5b3h_D2e-1113028425190Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108393.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6QST80.0A0A2R6QST8_ACTCH; Nodulation-signaling pathway 2 protein
STRINGcassava4.1_032945m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-19GRAS family protein