PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn213491
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 877aa    MW: 99610.2 Da    PI: 6.7165
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn213491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.86.4e-1785158289
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 fY+eYA++vGFs+++++ ++s+  +++  r+f C +eg +++++++              C+a+lk+++++ gkw v+k+++eH+H+ 
  Achn213491  85 FYDEYARRVGFSTCVNQFSHSEPGDKTNAREFLCAREGLKRKNSER--------------CNAMLKIERKDPGKWIVSKFVKEHSHST 158
                 9**************************************9998877..............**************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1385158IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28281371IPR018289MULE transposase domain
PROSITE profilePS5096610.967561597IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-10563595IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-9572599IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MHNPGAVSLK DICTFGERIM DVETIDLENV DNYVEVDEGD LEINEHAVVG SDNSTENFLS  60
TQDEVWVDEP HVGMEFESED AAKTFYDEYA RRVGFSTCVN QFSHSEPGDK TNAREFLCAR  120
EGLKRKNSER CNAMLKIERK DPGKWIVSKF VKEHSHSTVT PSKVHYLRPR KLFSGTNKGM  180
DESYTDGRTS STVMMHVSVD GNHVSGERIR GNPQAKTLVR SGHRKGNIGD AQNLLDYFKN  240
MQAEHPGFYY AVQLDKSNCM TNVFWADARS RTAYRNFGDA VTFDTTSRTN NYKVPYASFT  300
GVNHHGQMVL FGCGLVVDES ESSFTWLFRT WLAAMNDRPP LSITTDQDKV IKSSVSKVFP  360
STRHRICKWH VLGEGQRRLG RLRKNHPAFN GDLYNCINMA ETIEEFESSW NSLIDKYHQQ  420
KNDWLQALYS TREHWVPVYF RDSFFASISS DQGSEAAVSF FDGYADEQTT LPMFFRQYER  480
ALEQSFQKEI EADFDTVCTM PLLKTPSPME KQAADVYTRK IFMKFQEELV ETFAYTANKE  540
YGDGPFSRYR VAKFEDQQKA YIVSLNILEL RATCSCQMFE YSGILCRHVL TVFTVTNVFT  600
LPSHYVKKRW TRHAKSEAGL DDRGVEVEGS ESLALRYNSL CREAMKYAEE GAIAVEMYSV  660
AMNAIREGRK KVAVAMKDAA KVTPKLQVCG SQEDGNKEID VSKAEMTPLL WPNVQVKHHP  720
SVNDSDMNRT PWRSYRDGAT HPLNRNNIGA CTPTPQKDLP YMAPLSLQRD DGTSNDMVIL  780
PYLRSMTWLM ENKSLRPAKR VAVINFKLRD YGNGTSGETE VKFQLSKVTL EPMLSSMASI  840
GEQLATASNQ VAVINLKLRK RMDFEECGKS MSDTCG*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096885.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X2
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6Q4C10.0A0A2R6Q4C1_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_08s0040g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]