PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn206251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 247aa    MW: 26075.4 Da    PI: 10.3876
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn206251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.32.6e-3828115388
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 
                 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  + + +++s+s+ss++
  Achn206251  28 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSVSLRNNSSSHSSIS 115
                 79******************************************************************88853222222222233332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923387IPR017887Transcription factor TCP subgroup
PfamPF036343.2E-3433120IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSNSDGTANG AIIENQQRQQ PPNGALVVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTV SVSLRNNSSS HSSISAALDP  120
KPMITPTPFI LGKRFRPDDD TVDGAAKDDV SAAVVGPAGG FWALPARPDF GQVWSFAAAP  180
PDMVMPSPAM TSQPPFTGRF IQQQPMGEAS AARVGNYLPI AQGHLNLLAS LSGAPAASSS  240
RREDER*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407983e-70AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047763e-70AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149583e-70AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-70CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051557.11e-125transcription factor TCP7
SwissprotQ9FMX21e-90TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2R6PGI91e-177A0A2R6PGI9_ACTCH; Transcription factor like
STRINGVIT_10s0042g00170.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-61TCP family protein