PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn205001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 358aa    MW: 37828.9 Da    PI: 7.5795
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn205001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.31.3e-3861143485
         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                  k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s +ss+++ 
  Achn205001  61 TKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSIRSSGGTT 143
                 799****************************************************************9996555555555533 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.49765119IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-3565159IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKLMESRSNN HRRSTSSDSD HHTHNQQPAD SDLHLLRTGS GQTQPHAPFT TTDSAAANKI  60
TKKPSKDRHT KVDGRGRRIR MPAVCAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT  120
GTGTIPANFS TLNVSIRSSG GTTVSAPPSK SPVHGCPGSM LGFPGNGFVE LSGQNFMKKR  180
FKESNTPAAE PDRTGVQYGD PGSDPKTGSF HPSFVPAPAM WAVAPSTENG GGNGFWMLPA  240
ATALVGARQP EHQMWPYKGT PVQRIGGFEF PGSGRFSPVQ LVPQAQPVQQ LGLGMSEISG  300
MGNLGSINVN ASSGSGGSGG GGRVELGMNL EQHHHENHQT EQPEASESGD ESPEVSH*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092108.11e-109transcription factor TCP23-like
SwissprotQ9C5182e-62TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A2R6RP680.0A0A2R6RP68_ACTCH; Transcription factor like
STRINGXP_009624724.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-58TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]