PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn203721
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 481aa    MW: 52529.5 Da    PI: 8.3445
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn203721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17166215155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Achn203721 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215
                 78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-16166225IPR016177DNA-binding domain
PfamPF008475.5E-9166215IPR001471AP2/ERF domain
CDDcd000185.22E-12167225No hitNo description
Gene3DG3DSA:3.30.730.104.3E-17167223IPR001471AP2/ERF domain
PROSITE profilePS5103217.794167223IPR001471AP2/ERF domain
SMARTSM003801.4E-32167229IPR001471AP2/ERF domain
CDDcd000186.23E-14258303No hitNo description
SuperFamilySSF541712.48E-6258302IPR016177DNA-binding domain
SMARTSM003801.4E-13259307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLDLNVDVVT LDSPCDEVAT KIASEKLQDG DDSGTSNSSV VSADDAPNNV ADEDSSSNQI  60
APSNNTSTFD FDVLNKGKST SVGKMAGIGD ETDRRNTTPA LVTRQFFPVG DLEKIRSGSS  120
SATSLLRPQW LNLSFPDTGG GVELRSIQPQ KQQVKKSRRG PRSRSSQYRG VTFYRRTGRW  180
ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNISDYEED MTQMKNLTKE  240
EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKAYDKAAIK CNGREAVTNF  300
EPSTYEGEMS GVTAQNLDLS LLISLPTDVP KGNDNFRDFQ SQCAAYELSD TKRLKLESSV  360
SAPVDGQNIC GLTMAAKRST IWSGIYPGFT PNYEERALGK AAEALPSQPA FSNWAWQVQS  420
HSVVSPAALF PTAASSGFAS SPITTLSPPL PLQTPQNKTA HKLFPPTPAN TISHFYHHKT  480
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125724.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-103RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2R6PLA90.0A0A2R6PLA9_ACTCH; Ethylene-responsive transcription factor RAP2-7 like
STRINGXP_010260155.11e-146(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-104related to AP2.7