PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn186241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 248aa    MW: 27747.3 Da    PI: 6.5114
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn186241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.84.9e-56701731101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+sfw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  Achn186241  70 QLQSFWANQfqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 168
                 89******99999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr++l
  Achn186241 169 PREDL 173
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.51E-3359164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.6E-3884156IPR009072Histone-fold
PfamPF008081.2E-2192155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDQHGSSSRM PYSVAPYPAN QSMRPSAPAS VGAIQSPQTT GPSASPVQLA QHQLAYQHVH  60
QQQQQQLQQQ LQSFWANQFQ EIEQTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVVFA  120
RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS  180
IPRALPVGGP TEGLPYYYMP QHGAQVGAPG MFMGKPVDQS LYGQSPHPYT TAQQMWPQQQ  240
QQPPPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C6e-42561704119HapE
4g92_C6e-42561704119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062129.11e-121PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_015062130.11e-121PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ8L4B28e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLK4AXN21e-121K4AXN2_SOLLC; Uncharacterized protein
STRINGSolyc01g079870.2.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-83nuclear factor Y, subunit C9