PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn184961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 152aa    MW: 16661.4 Da    PI: 9.9212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn184961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-054971123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C + F ++  L  H++ H
  Achn184961 49 FSCNYCQRKFYSSQALGGHQNAH 71
                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-64676No hitNo description
PROSITE profilePS5015711.0944976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MFFHFTMSLN PNTSLNMGFP SSYDLNLNLN LDRSSPSSTS PGSSEPRIFS CNYCQRKFYS  60
SQALGGHQNA HKLERTLAKK SRELISTARP HGGWNHRSGA SSGSSNQGGT GLGRAGRFAS  120
DLSYGRREMS YGYKSESVQD EFNHPDLSLK L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656831.14e-47PREDICTED: zinc finger protein 2
SwissprotQ392611e-24ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A2R6S1R11e-101A0A2R6S1R1_ACTCH; Zinc finger protein
STRINGVIT_11s0052g01120.t012e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-21zinc finger protein 2