PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn183011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 304aa    MW: 31894.4 Da    PI: 8.2798
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn183011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.34.5e-41511871129
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......kaak 92 
                 +a+k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++t+eWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      +  +
  Achn183011  51 PAPKRASTKDRHTKVEGRGRRIRMPAVCAARVFQLTRELGHKSDGETVEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshfrtcNYFN 149
                 589*******************************************************************99988888888888666667777763333 PP

         TCP  93 saakskksqksaasalnlakesrakararare.rtrek 129
                 ++  +  s++ ++++l++ ++s  ++ra a++  t+++
  Achn183011 150 QNFVTGYSSNTSTAMLDFVESSAGRKRAAAEDdLTAQN 187
                 33344455555555899999888888888777555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3957158IPR005333Transcription factor, TCP
PROSITE profilePS5136927.33458112IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGEDRIPHP NFPFQLLGKK LEEEASSSSY AAAGSGATAS QNIVVAEQKK PAPKRASTKD  60
RHTKVEGRGR RIRMPAVCAA RVFQLTRELG HKSDGETVEW LLQQAEPAVI AATGTGTIPA  120
NFTSLNISLR SSGSTMSAPS HFRTCNYFNQ NFVTGYSSNT STAMLDFVES SAGRKRAAAE  180
DDLTAQNQLG NYMLQSNSGS VPAGPVWMSG DSMWPLPSSS SSSSNFYRGG LSTSGLHFVN  240
FPTPMALLPG NHQLGTGIDG GGGGVVMDGH LGMLAALGAF RPPPGTGGSK SQGSDHHETS  300
HHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP14, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in developing leaf blade and specific floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Involved in gynoecium and silique development. Modulates the development of the different tissues of the gynoecium through its participation in auxin and cytokinin responses. Modulates the expression of the cytokinin-responsive genes ARR7 and ARR15. May repress the expression of the auxin biosynthetic genes YUC1 and YUC4 (PubMed:26303297). Acts as negative regulator of anthocyanin accumulation under high light conditions. Modulates the expression of transcription factors involved in the induction of anthocyanin biosynthesis genes (PubMed:26574599). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). {ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:26303297, ECO:0000269|PubMed:26574599}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:21183706). Induced during seed imbibition (PubMed:25655823). Induced by cytokinin (PubMed:26303297). {ECO:0000269|PubMed:21183706, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:26303297}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641352e-62AK364135.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2022A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028054175.11e-104transcription factor TCP15-like
SwissprotQ9C9L21e-59TCP15_ARATH; Transcription factor TCP15
TrEMBLA0A2R6RFF40.0A0A2R6RFF4_ACTCH; Transcription factor like
STRINGVIT_17s0000g06020.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-57TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]