PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn182951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 275aa    MW: 29868.3 Da    PI: 9.7188
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn182951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.51.8e-3449105358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+Y+eClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr+ +
   Achn182951  49 VVVYRECLKNHAASLGGHAVDGCGEFMPSPAATpADPTSLKCAACGCHRNFHRRDDD 105
                  589***************************9999********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1732103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.1E-2950103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.22552103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-3052103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.7E-29162231IPR009057Homeodomain-like
SuperFamilySSF466891.66E-18163231IPR009057Homeodomain-like
TIGRFAMsTIGR015659.0E-25170226IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDPTTTAAAT NSLHTENETP LANKSLSFTN GALKKHAPYH HHSQPLAVVV VYRECLKNHA  60
ASLGGHAVDG CGEFMPSPAA TPADPTSLKC AACGCHRNFH RRDDDPSPAA AFFLNFRRPP  120
PPSRRRNSPL SSPSLSPPPQ PQPQPSYHHP NAVVTPATPT PAKAENSSGR KRFRTKFSRD  180
QKEKMHSFSE KLGWKMQRSD EGLIEEFCSE IGVGKGVLKV WMHNNKHTFG KRDINYAAAA  240
ATTTTTNNHH QIHHHEGNNG VHLHVSADGS PSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-201712281875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116046.12e-90zinc-finger homeodomain protein 11-like
TrEMBLA0A314KKG84e-83A0A314KKG8_NICAT; Zinc-finger homeodomain protein 9
STRINGXP_009620302.11e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-44zinc finger homeodomain 1