PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn174701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 219aa    MW: 24150.4 Da    PI: 4.7244
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn174701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1789.3e-56321361102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv
  Achn174701  32 QLQMFWTFQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 130
                 89****9887789************************************************************************************** PP

       NF-YC  97 prdelk 102
                 prde+k
  Achn174701 131 PRDEIK 136
                 ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-3412126IPR009072Histone-fold
PfamPF008081.4E-2054117IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.9E-3755132IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDNNQPPPPA AAAPPYPPQP PYHHLLQQQQ QQLQMFWTFQ RQEIEQVNDF KNHQLPLARI  60
KKIMKADEDV RMISAEAPIL FAKACELFIL ELTIRSWLHA EENKRRTLQK NDIAAAITRT  120
DIFDFLVDIV PRDEIKEEVG MGMVGPTASG VPYYYPPMGQ PAPPPGVMMG RPAMDPNAAG  180
MYLQPPSQAW QSVWQAAAED GAYDGGGSGG QGSLDGQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-433313219119HapE
4g92_C2e-433313219119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351508.11e-116PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X1
RefseqXP_008464428.11e-116PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9FMV51e-106NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0A0LNK71e-116A0A0A0LNK7_CUCSA; Uncharacterized protein
TrEMBLM1B8B61e-115M1B8B6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394701e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-80nuclear factor Y, subunit C1