PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn170441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family RAV
Protein Properties Length: 361aa    MW: 39770 Da    PI: 9.863
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn170441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.5e-1361109155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+++++g
  Achn170441  61 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAEAARAYDIAAQRFRG 109
                 689***9788.8*********3.....5**********99*************98 PP

2B3992.8e-31189287194
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 f+k+ tpsdv+k++rlv+pk++ae++    ++++ +++ l ++d  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++   ++++l++
  Achn170441 189 FEKAVTPSDVGKLNRLVIPKQHAERNfplqSENTSKGVLLNFKDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFHRSTAvHDKQLFI 287
                 89***************************9778889***************************************************876666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-1661117IPR016177DNA-binding domain
CDDcd000182.28E-2461116No hitNo description
PfamPF008473.6E-861109IPR001471AP2/ERF domain
SMARTSM003801.4E-2962123IPR001471AP2/ERF domain
PROSITE profilePS5103219.63862117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1962117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.7E-40185294IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-28188277No hitNo description
SuperFamilySSF1019361.96E-29188277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.972189293IPR003340B3 DNA binding domain
PfamPF023621.1E-28189289IPR003340B3 DNA binding domain
SMARTSM010194.0E-22189293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESSCIDEST TSDLLSFSPA RTPPATVKSP PESLCRMGSG TSVVLDAEGG IEAESRKLPS  60
SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEAEAARAY DIAAQRFRGR DAVTNFKPLS  120
ESEADDEAEA AFLTEHSKAE IVDMLRKHTY GDELEQSRRS FGGKKQCKEK ISNASGSDKT  180
IGKATQQLFE KAVTPSDVGK LNRLVIPKQH AERNFPLQSE NTSKGVLLNF KDVAGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD VVSFHRSTAV HDKQLFIDWK VRGDGSSVAG  300
FPVQVQPVHM VRLFGVNIFK VPFTGGVVDS SGGCGGNKRI RELEMLGFGC SKKPRVIGAL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-5418529210117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117439.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-145RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2R6PB850.0A0A2R6PB85_ACTCH; AP2/ERF and B3 domain-containing transcription factor
STRINGcassava4.1_010157m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-132related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]