PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn169621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 126aa    MW: 13776.7 Da    PI: 8.4821
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn169621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer826.9e-262778256
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                 +kvrY eC++N Aas+Gg ++DGCgEfmp    +g+++   C ACgCHRnFHR  
   Achn169621 27 NKVRYAECRRNYAASVGGFVLDGCGEFMPR---QGSQQVEFCDACGCHRNFHREM 78
                 689**************************9...56679999************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-212877IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-122988IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-223077IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.3033178IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MASNESVTQP IEKTDRHVIN VLLYPSNKVR YAECRRNYAA SVGGFVLDGC GEFMPRQGSQ  60
QVEFCDACGC HRNFHREMLI EGNVAGVANL YLFPPPPPPP PSPSHSSKPK GVLKVYPSTM  120
GAKHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RGI25e-88A0A2R6RGI2_ACTCH; Zinc-finger homeodomain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-17homeobox protein 27