PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn156971
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 263aa    MW: 29088.7 Da    PI: 6.7725
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn156971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.22.5e-3380155277
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaes 77 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG d++s++i+WL+++ak a+++l ++  +++ +   e   
  Achn156971  80 TGRKDRHSKVCTARGPRDRRVRLSANTAIQFYDVQDRLGCDRPSEAIDWLMKEAKSAMDALDQSADQNPDQIldE--P 155
                 689*************************************************************44444333222..2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3080148IPR005333Transcription factor, TCP
PROSITE profilePS5136930.83482140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MCSKLDLSRN HHHQSDEEDQ NQPSPSQNLP LPVKHTLSVP SFVPKKLSVA RVRERAQKIR  60
ERTRGEIVEV QGGRILRSIT GRKDRHSKVC TARGPRDRRV RLSANTAIQF YDVQDRLGCD  120
RPSEAIDWLM KEAKSAMDAL DQSADQNPDQ ILDEPHQIGI SNSGYFGEEP MNSQEQLFSQ  180
GGTLQSSYSP AFRALMSPQI SNLNCETILP QVISPCLDTG NLCPSDGFSQ VFVSRGIQGS  240
PGLAELELPC KFLTVEGSKA FD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1787140154Putative transcription factor PCF6
5zkt_B2e-1787140154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081049.16e-43transcription factor TCP13-like
TrEMBLA0A2R6QAA21e-168A0A2R6QAA2_ACTCH; Transcription factor like
STRINGGSMUA_Achr8P19990_0011e-43(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.15e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3