PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn142001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 182aa    MW: 20754.4 Da    PI: 8.7894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn142001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-2063113255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+++AeI+dps+n+   r +lg+f taeeAa+a+++a+ +l+g
  Achn142001  63 KYRGIRRRP-WGKYAAEICDPSKNK--SRLWLGTFETAEEAARAYDRAAYSLRG 113
                 8********.***********9984..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.26E-1962122No hitNo description
PfamPF008471.0E-1363113IPR001471AP2/ERF domain
PROSITE profilePS5103224.36863121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3163122IPR001471AP2/ERF domain
SMARTSM003801.8E-3663127IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2363122IPR016177DNA-binding domain
PRINTSPR003671.6E-116475IPR001471AP2/ERF domain
PRINTSPR003671.6E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNCERPASDN WRMAKRSTHM FTYRESHLHT CNVLLICIHY PKKKMEGGKK KAQENSGRGG  60
EAKYRGIRRR PWGKYAAEIC DPSKNKSRLW LGTFETAEEA ARAYDRAAYS LRGRQAILNF  120
PNEFHCSSPS HGLDGPSCSR VGVESSQEEQ VIEFEYLDDK LLEELLGTNE DRHANKISKF  180
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-32531613114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448630.18e-47PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2R6P7412e-96A0A2R6P741_ACTCH; Ethylene-responsive transcription factor
STRINGGorai.001G252900.13e-46(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]