PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 187aa    MW: 20911.8 Da    PI: 11.4201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-1561111255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr ++ r +++AeIrdp     + +r++lg+f tae+Aa a+++a+ +++g
  Achn141501  61 HYRGVRPRP-REKFAAEIRDPAR---SgARVWLGTFHTAEDAAGAYDRAAYRMRG 111
                 8*****999.8*********843...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-2860120IPR001471AP2/ERF domain
CDDcd000182.24E-2260120No hitNo description
SMARTSM003807.6E-3161125IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2061121IPR016177DNA-binding domain
PROSITE profilePS5103221.41761119IPR001471AP2/ERF domain
PfamPF008472.7E-961111IPR001471AP2/ERF domain
PRINTSPR003678.8E-76273IPR001471AP2/ERF domain
PRINTSPR003678.8E-785101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MCTEIDFESE MALMDSVRRH LLDDNWGQLP PKAKRLRGHD SLRSPHRGGR GAAVVLPKWK  60
HYRGVRPRPR EKFAAEIRDP ARSGARVWLG TFHTAEDAAG AYDRAAYRMR GSRALFNFPH  120
RVNSGKPDQV RVASKRSSPE RLRSSESELP KRRRKVVAAA EAVVVQVNKV EEGSTGLEAL  180
LIPRGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3258126270ATERF1
3gcc_A1e-3258126270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155PKRRRKV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112381.11e-47ethylene-responsive transcription factor 1A-like
RefseqXP_028113988.11e-47ethylene-responsive transcription factor 1A-like
SwissprotQ9LW502e-41ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2R6PI931e-118A0A2R6PI93_ACTCH; Ethylene-responsive transcription factor 1A like
STRINGPOPTR_0003s07910.11e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-28ethylene responsive element binding factor 1