PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn121971
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 170aa    MW: 18762.8 Da    PI: 5.8827
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn121971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer71.61.3e-222374258
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 +++rY++C+kNh a++G ha+DGC Efm+s     +a+ l C  CgCHRnFH ++ +
   Achn121971 23 TNIRYEDCRKNHGARMGKHATDGCLEFMAS-----DAENLMCDVCGCHRNFHTKKLV 74
                 579**************************9.....5778*************99865 PP

2ZF-HD_dimer83.81.9e-2684143260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGgha.vDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++v+Y++C kNhA+++G ++  DGC Efm+segeeg+ +al CaACgCHRnFHR+ +e+e
   Achn121971  84 SEVKYEDCCKNHAVRMGKYSsSDGCLEFMASEGEEGSRDALMCAACGCHRNFHRKIEEKE 143
                  689**************98537*********************************88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-112173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-192572IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-182672IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.2492772IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2386139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1386145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-2187138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.38488139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSDIKEDAVN KDCSNATSTV QTTNIRYEDC RKNHGARMGK HATDGCLEFM ASDAENLMCD  60
VCGCHRNFHT KKLVRADETS RINSEVKYED CCKNHAVRMG KYSSSDGCLE FMASEGEEGS  120
RDALMCAACG CHRNFHRKIE EKEEVGGKRP ALSPPSGGAA YYSSDDYYD*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117445.13e-47zinc-finger homeodomain protein 3-like isoform X2
SwissprotQ9LJW54e-17MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A2R6PUE41e-119A0A2R6PUE4_ACTCH; Zinc-finger homeodomain protein
STRINGXP_002534013.17e-18(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-19mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]