PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn119271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 249aa    MW: 27699.3 Da    PI: 5.9697
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn119271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC172.93.3e-54751781101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+ fw++q   ie++t+fknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw h+eenkrrtl+k+diaaa+trt+ifdflvd+v
  Achn119271  75 QLHGFWANQhqdIEQTTEFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWDHTEENKRRTLQKNDIAAAITRTEIFDFLVDVV 173
                 7899***99999*************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr+el
  Achn119271 174 PREEL 178
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.36E-3269169IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.3E-3789161IPR009072Histone-fold
PfamPF008085.3E-2297160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDQQGHAQPQ ETGLVPSSSH MPYSSTAYEA TQMMRPPTAA SVGSVQPPQI AGQLAQHQLA  60
YQQIHQQQQQ QLQHQLHGFW ANQHQDIEQT TEFKNHSLPL ARIKKIMKAD EDVRMISAEA  120
PVVFARACEM FILELTLRSW DHTEENKRRT LQKNDIAAAI TRTEIFDFLV DVVPREELKD  180
EVVGAIPSGA LPVGGPGDGL PYYYMPQQVG ALGMFIGKPV DQALYGQQPH PYTAAQMWPQ  240
QQQPPPGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B1e-38921751497NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875193.11e-112PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.11e-112PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875195.11e-112PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B23e-79NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-112U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.48e-77nuclear factor Y, subunit C9