PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn107481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 161aa    MW: 17343.7 Da    PI: 9.0467
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn107481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.13.4e-261593866
         TCP  8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................s 66
                 +++h  v+gRdRR+R++a caar+F+L++ LG+ + ++tieW lqqa+pai +  g+                    +
  Achn107481 15 AKDRHIRVNGRDRRIRIPAACAARVFQLTQILGHRTSGQTIEWILQQAEPAINKVIGNstgvptyapapaanpsypplP 93
                69********************************************************777776664433333222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.3721569IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-241577IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MALFNSSSKF KIGTAKDRHI RVNGRDRRIR IPAACAARVF QLTQILGHRT SGQTIEWILQ  60
QAEPAINKVI GNSTGVPTYA PAPAANPSYP PLPSTAMFSA PPEGSTAPTP SGSQASAPMS  120
SVSITEQGLL SFDYDLTDVN YEAIFSTMDF PNMPYHMKHF *
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C5182e-22TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A2R6PEX21e-113A0A2R6PEX2_ACTCH; Transcription factor like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-14TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]