PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn107011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family RAV
Protein Properties Length: 349aa    MW: 38975.8 Da    PI: 9.6629
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn107011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1265113155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+ +++g
  Achn107011  65 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAEAARAYDVAAHRFRG 113
                 689***9788.8*********3.....5**********99************998 PP

2B397.21e-30187282195
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+ tpsdv+k++rlv+pk++ae+h  ++  ++  l l+d  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++++l++ 
  Achn107011 187 FEKAVTPSDVGKLNRLVIPKQHAERHfPLSVSKGLLLNLKDAIGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVRFSRSINHDKQLFID 282
                 89*************************666678889************************************************876667667766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-1665122IPR016177DNA-binding domain
CDDcd000181.30E-2265120No hitNo description
PfamPF008473.6E-865113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1966122IPR001471AP2/ERF domain
PROSITE profilePS5103219.58566121IPR001471AP2/ERF domain
SMARTSM003801.6E-2666127IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-40177287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-27186272No hitNo description
SuperFamilySSF1019369.16E-30186285IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-29187283IPR003340B3 DNA binding domain
SMARTSM010196.4E-24187287IPR003340B3 DNA binding domain
PROSITE profilePS5086314.635187287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSVEAAAGLR GDEHTEKTLG PRLFRHQEMD GRSTDESTTS TDSLSIPAPL EGGVEAESSR  60
KLTSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEAEA ARAYDVAAHR FRGRDSITNF  120
TSSSERDSDS EKGDDLEAVF LASRTKAEIV DMLRKHTYND ELDQSRNEHE SRGPTNDRAM  180
EATEQLFEKA VTPSDVGKLN RLVIPKQHAE RHFPLSVSKG LLLNLKDAIG KVWRFRYSYW  240
NSSQSYVLTK GWSRFVKEKN LKAGDVVRFS RSINHDKQLF IDWKTRGGSG VLNPVRPVQM  300
VRLFGVDIFK VPVSGGVDSS GSCGGKRMRE REFLGLECGK KPTVIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5418328910120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117439.11e-155AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotP822801e-123RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A2R6QQN70.0A0A2R6QQN7_ACTCH; AP2/ERF and B3 domain-containing transcription repressor like
STRINGcassava4.1_010157m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-112RAV family protein
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]