PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn083431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 266aa    MW: 29597.4 Da    PI: 5.9704
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn083431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.65.9e-56841871101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  Achn083431  84 QLQSFWSNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 182
                 89******99999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr+el
  Achn083431 183 PREEL 187
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.64E-3282178IPR009072Histone-fold
PfamPF008082.5E-21106169IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-37107184IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDIMDQQGHG HPQGAGVVGS AAQLHYGTSQ YEPNQVNGTP NQGPVVTSVG ASLSPSQPTG  60
AQLAQHQLAY QHIHQQQLQQ LQQQLQSFWS NQYQEIEKVT DFKNHSLPLA RIKKIMKADE  120
DVRMISAEAP IVFARACEMF ILELTLRSWN HTEENKRRTL QKNDIAAAIT RTDIFDFLVD  180
IVPREELKDE ALASIPRGTI PVGVPTDAYP YYYMPAQHSP QAGTPGMMMG KPVMDPVMYA  240
QQPHPYMAPQ MWPQAPQEPQ SPSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-6292184395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098953.11e-152nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_028098954.11e-152nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ8L4B22e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A2R6R3130.0A0A2R6R313_ACTCH; Nuclear transcription factor Y subunit C-9 like
STRINGXP_008246497.11e-142(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-85nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]