PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 602aa    MW: 68767.3 Da    PI: 9.2645
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.71.9e-2311102190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                 +fYn+YA++vGFsvr+sk++k  ++g+ ++r f+Cs+egkr ++k++   +k++r+r+etr gC a++k+k  +  ++++v+++   HnH ++
  Achn069111  11 QFYNTYAYKVGFSVRRSKEHKD-KSGRLVDRIFCCSCEGKRGKDKRAgrIVKSHRPRPETRFGCLARMKIKYCReAKQYYVAEFAPVHNHMVC 102
                 6*****************9998.7777****************99998889999******************99899*************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1911102IPR004330FAR1 DNA binding domain
PfamPF105517.0E-31224318IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKFLTEEAAY QFYNTYAYKV GFSVRRSKEH KDKSGRLVDR IFCCSCEGKR GKDKRAGRIV  60
KSHRPRPETR FGCLARMKIK YCREAKQYYV AEFAPVHNHM VCTPSKTHLH RSHRNFGVAQ  120
AAQADMANES GIAPSAIFEF MARQVGGRAG LGFIPQDYKN YLRSKRSVQM KVGDTCGVLE  180
YLQKMQLEDP NFFYAIQVDE DDLITNIFWA DAKMMADYAN FGDVVCFDTT YRKNKDGRPF  240
AMFVGVNHHK QTTIFGAALL YDETADSFMW LFDTFAKAIC GKTPKTILTD QDATMAKALV  300
ARWPGTVHRL CIWHIYQNAA TNLSGVFAKF KDFSKDFSEC IYDYEDEDDF IEAWNAMLVK  360
YNLQENDWLR RMFNMKEKWA LVYGRQTFCA DLTTTQRSES MNSALKRYAN YNNDLLRFFQ  420
NFQRWTKNAK SGSIESTCVS TPVEDPKVTM GTRYKELCCL CTQLATRAAE TNEAYKIALN  480
ALKKIAEEVD ASLIGKTFHG TPHANITASQ EINEATYGEG SQKKVKGLKV KKRTTKSSKR  540
PRSALERAIR SKKASVRSNL NSMKNPIQQK EIHHSSSISQ ALELESEESD FLAFEVEQNS  600
H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1521539QKKVKGLKVKKRTTKSSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652765.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6QX940.0A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEMJ279830.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-97FAR1-related sequence 5