PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn058751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 838aa    MW: 95789.9 Da    PI: 6.6485
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn058751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.92.5e-1666139289
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 fY+eYA++vGFs+++++ ++s+  +++  r+f C +eg ++++ ++              C+a+l++++++ gkw v+k++++H+H+ 
  Achn058751  66 FYDEYARRVGFSTCVNQFNRSEPGDKTNAREFLCAREGLKRKNCER--------------CNAMLRIERKDPGKWIVSKFVKDHSHST 139
                 9**************************************9998766..............**************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1366139IPR004330FAR1 DNA binding domain
PfamPF105516.7E-31262352IPR018289MULE transposase domain
PROSITE profilePS5096610.991538574IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-10540572IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-9549576IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MDVEAIDLEN VDNYMEVDEG DLEINEHAVV GSDNSTENFL STQDEVGIDE PHIGMEFESE  60
DAAKTFYDEY ARRVGFSTCV NQFNRSEPGD KTNAREFLCA REGLKRKNCE RCNAMLRIER  120
KDPGKWIVSK FVKDHSHSTV TPSKVHYLRP RRLFSGANKG MDESYSEDRT LSPVMMHVSV  180
DGNHVSGERN RGNPRAKTLV RSGHIKGTIG DAQNLLDYFK NMQGEHPGFY YAVQLDKSNH  240
MTNVFWADAR SRTAYRNFGD AVTFDTTYRT NNCKVPHASF TGVNHHGRMV LFGCGLVVDE  300
SESSFTWLFR TWLSAMNDRP PLSITTDQDK VIKSAVSKVF PNTRHRICKW HVLGEGQRRL  360
DRLRKNHPAF NGDLYNCINM TETIEEFESS WNSLIDKYHQ QKNDWLQALY STREHWVPVY  420
FRDSFFASIS SDQGMSFFDG YVDEQTTLPL FFRQYERALE QSFQEEIEAD FDTIRTMPLL  480
KTPSPMEKQA ANIYTRRIFM KFQEELVETF AYTANKEYGD GSFSRYRVAK FEDQQKTYIV  540
SLNILELRAT CSCQMFEYSG ILCRHILTVF TVTNVFTLPS HYIKKRWTRH AKSGAGLDDR  600
GVEVEGSESL ALRYNSLCRE AMKYAEEGAI AVEMYCVAMN AIREGRKKVA VAMKDAAKVT  660
PKPQVYGGQE DGNKEIDVSK AEMTPLLWPH VQAKHQPAFN DSDMNRKPWR SYQDEATHPL  720
NRNNIVACTP TPQKDLPCMA PLSLQRDDGT SNNTVILPYL RSMTWFMENK SLRPAKRVAV  780
INFKLQDYGN DTSGETEVKF QLSKVTLEPM LSSMASIGEQ LATAANQVAV INLKMPE*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096884.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_028096885.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X2
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6QVJ50.0A0A2R6QVJ5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_08s0040g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]