PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn050241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 543aa    MW: 60280.1 Da    PI: 6.2029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn050241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.78.3e-791605362374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++lL  cA av++g+l+++q+lL  l+elasp+gd+++Rlaa+ ++AL + l++ vs++++   + s+t+    +   ++l  f evsP++ f + +aN
  Achn050241 160 EQLLNPCAAAVTAGNLTRVQHLLYVLHELASPSGDANHRLAAHGLRALTHLLSSPVSSVSQGPiNFSSTK---PQFFQKSLMRFDEVSPWFMFPNKIAN 255
                 689***************************************************9999987652444444...5666666667**************** PP

        GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakr 185
                 + Il+ ++++   + +Hi+D+++s+G+QWp+Ll+aL+ R+ + pp +R+T+vg+++ +          +    +  ++L  +A+++++++++n l    
  Achn050241 256 NSILQILSEQdqsRNLHILDIGVSHGVQWPTLLEALSRRSgGAPPLVRLTVVGAATDHdritdnpfvISPPGYSFTSQLLCYAKSININLQINRLDNLP 354
                 ******9988776889************************55677*********99889999988886667778889999**************9888* PP

        GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpresee 281
                 l++l+ e ++++p+E+l+V+ +++lh+l    ++ +++r+e+L+++++l+Pk vv++e+++d+   + ++F+++f++ +ey + ++ds +a +    + 
  Achn050241 355 LQNLNAEIINFSPDETLIVCAQFRLHHLN---HNHPDNRTEFLQVLRNLEPKGVVLSENNTDCsctSCGDFATGFSRRVEYLWRFLDSSSAAF----KG 446
                 ****************************8...56666678*******************97763244569*******************7765....55 PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r + Er++++ e+++++ ++ ++    +e +ekW er++++GF    l+e++ ++a++llrk++ ++++r ee++g++ l Wk++p+ ++S W+
  Achn050241 447 RESDERRVMEGEASKALLNSDEM----NEGKEKWCERMRRVGFAGQVLGEDTIDEARALLRKYDsNWEMRAEEKDGCVGLWWKGQPVSFCSLWK 536
                 55556666666688888888777....99***********************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.32133515IPR005202Transcription factor GRAS
PfamPF035142.9E-76160536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MTLGESEPNT SSDHILDWLD SLEGSIPFLP PFLDDPYNSG QINGDHWWVE NQDLDPELVH  60
PSSTYFNNST STITTATSTT PPDLIPSNNF QPSDSSKKRK GSDNPAPKPS QSHRKNQNRR  120
NNEADDGDGV KRAVGGKKGS AKSAGNNCSN GNNREGRWAE QLLNPCAAAV TAGNLTRVQH  180
LLYVLHELAS PSGDANHRLA AHGLRALTHL LSSPVSSVSQ GPINFSSTKP QFFQKSLMRF  240
DEVSPWFMFP NKIANNSILQ ILSEQDQSRN LHILDIGVSH GVQWPTLLEA LSRRSGGAPP  300
LVRLTVVGAA TDHDRITDNP FVISPPGYSF TSQLLCYAKS ININLQINRL DNLPLQNLNA  360
EIINFSPDET LIVCAQFRLH HLNHNHPDNR TEFLQVLRNL EPKGVVLSEN NTDCSCTSCG  420
DFATGFSRRV EYLWRFLDSS SAAFKGRESD ERRVMEGEAS KALLNSDEMN EGKEKWCERM  480
RRVGFAGQVL GEDTIDEARA LLRKYDSNWE MRAEEKDGCV GLWWKGQPVS FCSLWKLGDE  540
SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3815653684473Protein SHORT-ROOT
5b3h_B1e-3815653630419Protein SHORT-ROOT
5b3h_E1e-3815653630419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086747.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2R6R0F60.0A0A2R6R0F6_ACTCH; Nodulation-signaling pathway 1 protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-162GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]