PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn039821
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 324aa    MW: 36225.2 Da    PI: 6.38
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn039821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1332.7e-411042573135
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesssssas 83 
                  kkdrhski T++g+RdRR+Rls+e+a +fF Lqd+LGfdk+skt+ WLl+++k+aik+l +              s+ss s+c      +es +    
  Achn039821 104 SKKDRHSKIETAQGPRDRRMRLSLEVAPQFFGLQDMLGFDKASKTVGWLLNKSKTAIKDLKKGiphmkpspsvganSASSTSDCeglsgIDESTV---- 198
                 69*************************************************************99988888887665555567755443111111.... PP

         TCP  84 nsssg..........kaaksaakskksqksaasa.lnlakesrakarararertrekmriknk 135
                     +           +++s  ++ k++k +++   +  kesr+kar+rarert ek r++++
  Achn039821 199 ----EgdggqartskGKKPSPLSGAKEKKGTKALrKSATKESREKARERARERTLEKRRLNDQ 257
                 ....122233445543444444444444444433044555*****************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-43104253IPR005333Transcription factor, TCP
PROSITE profilePS5136934.132105163IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.347234251IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MYPSSNNDNT PITYPSLDQT ICFKSSLYDD FTSNSTQDQD PQSSSLYCFL SPNFPYEDDI  60
VLRQHLNNLL LQQQPPPLPE ATENMDDSTK NQCPSSVEPR KRSSKKDRHS KIETAQGPRD  120
RRMRLSLEVA PQFFGLQDML GFDKASKTVG WLLNKSKTAI KDLKKGIPHM KPSPSVGANS  180
ASSTSDCEGL SGIDESTVEG DGGQARTSKG KKPSPLSGAK EKKGTKALRK SATKESREKA  240
RERARERTLE KRRLNDQSKP TFEEMSSHDM NQLASNWSPF ENVDESPSNF QVEELDSSIF  300
NYDQHNTGIS QEMTLEELKP ICF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060129.13e-74transcription factor DICHOTOMA
TrEMBLA0A2R6PRR50.0A0A2R6PRR5_ACTCH; Transcription factor CYCLOIDEA like
STRINGPOPTR_0015s03140.19e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-22TCP domain protein 12