PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn033961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 322aa    MW: 36425.6 Da    PI: 9.6711
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn033961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP144.95.7e-45962343134
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec.....eaesssssasnsssgkaaksa 94 
                  kkdrhski T++g+RdRR+Rls+++a++fF Lqd+LGfdk+sktieWLl+++k +ikelt+  +ss+  sec      +es ++ +s++ ++ +++++
  Achn033961  96 SKKDRHSKINTAQGPRDRRMRLSLDVAREFFSLQDMLGFDKASKTIEWLLNMSKSSIKELTRGANSSSstSECevvsgIDESLVVRTSTKAKNTKSSAK 194
                 69************************************************************9555443377788877677777777777777777777 PP

         TCP  95 akskksqksaasalnlakesrakarararertrekmrikn 134
                 +k+ ++ k++++++  ak+sr karararert+ek++i++
  Achn033961 195 EKKPRELKRKSAFNPTAKDSRDKARARARERTSEKKKIDD 234
                 766666666666899999******************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4296231IPR005333Transcription factor, TCP
PROSITE profilePS5136935.91397155IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.401212229IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYPSNTNGNL ISYTLYDYDL NNANSKQDYH PPIPPPLSSI SYFPSPPYMP YEDDDLVFLH  60
DLFHSKTTSE TTNLPDDSNK KCQTPIERIQ RKRSHSKKDR HSKINTAQGP RDRRMRLSLD  120
VAREFFSLQD MLGFDKASKT IEWLLNMSKS SIKELTRGAN SSSSTSECEV VSGIDESLVV  180
RTSTKAKNTK SSAKEKKPRE LKRKSAFNPT AKDSRDKARA RARERTSEKK KIDDVKLPNL  240
EANTSHDMNR FGSWSDHPFD SGDKSGIHSH NNINPHHDVL AHDVEELSSS MIFNHSSGIS  300
KEVCRKIFLS FQKNGINSAM T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110704.13e-68transcription factor CYCLOIDEA-like isoform X1
RefseqXP_028110705.13e-68transcription factor CYCLOIDEA-like isoform X2
TrEMBLA0A2R6QI630.0A0A2R6QI63_ACTCH; Transcription factor like
STRINGXP_009592164.13e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-22TCP domain protein 12