PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn032401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 500aa    MW: 56911.5 Da    PI: 4.6426
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn032401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.56.7e-431414993374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +  ea++  + el + +  r+ e +sp g++++Rl +++   ++  +++      +    +et     ++  aa+k+f++++P+ k++h+taN a
  Achn032401 141 HLLKAYGEAMEMAQRELEDVITRRIMEKVSPVGETLERLGFHLFHSMR--MTE------EEHLIQET----NKNFEAAFKAFYQIFPYGKLAHFTANLA 227
                 67777788899999999999999*******************999875..555......22333344....35667899******************** PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
                 Ileav ++ e++Hi+Dfd+++G+QW++++++ as ++    lR+T ++s     ++ l e  ++L + A+++g++++ + +  ++le+ e+++++ +  
  Achn032401 228 ILEAVPENiETIHIVDFDAGEGVQWAPMIESVASLRK---ALRLTLIKS----GEDLLGEATRQLYDHARSCGLKLKVEEVGIEDLES-EIKKMKHRGg 318
                 *****9999************************9755...6********....99*************************85555554.4777766667 PP

        GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk......vvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.eerikvE 286
                  +E la n+++ l ++ +e   ++s+ +e+L++ k+l ++      ++v+ + +a     + + +   f   l++y al +s+e ++p    e+ri +E
  Achn032401 319 rREWLAFNCMVGLPHMRKE--RSRSHVREFLRQAKELLANfennegIIVIGDGDAGErlrSCSGYSSFFEGYLSHYQALCESMEWNFPVSLaEARIAME 415
                 79**************844..4455579********976544444599999999764344556788888889***************98777******* PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                   ++++ +++ +  ++ +      ++++ ++   e G++ ++l++++  +ak ++r  +   y v    ++++++vl W+++pLv vS Wr
  Achn032401 416 SLFVAPFVSSPIWLRKWK------KVREDSDLYAEIGLNGLRLTKENLVEAKEMVRDGE-SLYAVRiggQNNNEMVLEWRGNPLVRVSTWR 499
                 ***************998......3444479999***********************99.44888888999*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.113113477IPR005202Transcription factor GRAS
PfamPF035142.3E-40141499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MMQPELLEQL SWPYHNIINS PLDQEFPFSF SNTKDSFSSG ISSDQFLFTD VVVEYPMTGD  60
EFQVTDGDCM EGLEPIWGGD QLGDVCRWLC KDESEESFPS TNQYTEPKDV WSLSQSTKSS  120
DLLLTLPGGN IDIDSQLSLG HLLKAYGEAM EMAQRELEDV ITRRIMEKVS PVGETLERLG  180
FHLFHSMRMT EEEHLIQETN KNFEAAFKAF YQIFPYGKLA HFTANLAILE AVPENIETIH  240
IVDFDAGEGV QWAPMIESVA SLRKALRLTL IKSGEDLLGE ATRQLYDHAR SCGLKLKVEE  300
VGIEDLESEI KKMKHRGGRR EWLAFNCMVG LPHMRKERSR SHVREFLRQA KELLANFENN  360
EGIIVIGDGD AGERLRSCSG YSSFFEGYLS HYQALCESME WNFPVSLAEA RIAMESLFVA  420
PFVSSPIWLR KWKKVREDSD LYAEIGLNGL RLTKENLVEA KEMVRDGESL YAVRIGGQNN  480
NEMVLEWRGN PLVRVSTWR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077641.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6R8G20.0A0A2R6R8G2_ACTCH; Nodulation-signaling pathway 2 protein
STRINGEOY071071e-157(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-23GRAS family protein