PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn019771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 847aa    MW: 96521.4 Da    PI: 6.7043
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn019771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.91.1e-30138230291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk ++ +gkw+v+ +++eHnHel+p
  Achn019771 138 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDsSGKWVVSGFVKEHNHELVP 230
                 9***************************************998888545677889*****************99*****************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-29138230IPR004330FAR1 DNA binding domain
PfamPF105512.5E-32351443IPR018289MULE transposase domain
PfamPF044349.2E-12619665IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.251631667IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9642669IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MEKSGEKREE FKPIMGYGCY AMTVKGQGGA RVRRPLVASG WDILNILWEL YLIGGGLCKL  60
NMESEVIEFD IGLGGGGGAG SGSGDDDMDG EHPVMDDDMA DSSPPGGAFG AIYIPEGDPD  120
LEPYENMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK DGAIIQRSFV CAKEGFRNLN  180
EKRTKDREIK RPRTITRVGC KASLSVKIQD SSGKWVVSGF VKEHNHELVP PDQVHCLRSH  240
RQISGPAKTL IDTLQAAGMG PRKIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSFEGE  300
IQLLLDYLRQ MHAENPSFFY AVQGDEDQCT GNVLWADPKA RMNYTYFADT VTFDTTYRSN  360
RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFNT WLMAMSGRPP VSITTDYDMV  420
IRSAIMQVFP ETRHRFCKWH IFKKCQEKLS IVFLQHPNFE ADFHKCVNLT DSIEEFESCW  480
LSLVDKYDLR DHEWLQTIYS ARKQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN  540
LNQFFKLYEK ALESRNEKEV KADYDTMNTS PVLKTPSPME KQASELYTRK LFVRFQEELV  600
GTLTFMASKV DDDGEVTTYQ VAKFGEDHKA YYVKFNVLEM RATCSCQMFE FSGLLCRHVL  660
AVFRVTNVLT LPSHYILKRW TRNAKSTIIL EERATGVFNS YLESHTVRFN TLRHEAFKFV  720
DEGAESIDSY NMAMVALQEA SKRVAFATKN EGKTPMINGR IREDSTNGGS PANICSDDHP  780
KSNSQQFSED DMDKKIKDLT HELDCANRKC EVYRANLLSV LRDIEDHKQQ LSVKVQNVKL  840
SMKDVL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064185.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2R6R7500.0A0A2R6R750_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEOX989490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]