PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn004651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 420aa    MW: 45036.4 Da    PI: 7.7959
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn004651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.32.6e-38802222134
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec...eaesssssasn 84 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el++              s      +    ++++   + +
  Achn004651  80 SGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLLKAASVSINELPSIntsfpetpnqlssS------TrssPPGTETLDE-Q 171
                 689***********************************************************9966665554433210......1122222222222.2 PP

         TCP  85 sssgkaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                 ++++ + + +a+s+ s++s  s l+l++ esr kar+rarer +ek + ++
  Achn004651 172 QQHHVSLSRSACSSTSDTSRGSGLSLSRsESRVKARERARERRTEKEKERE 222
                 33335556666888888888889****99************8888877664 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-4181220IPR005333Transcription factor, TCP
PROSITE profilePS5136931.46182140IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.497200219IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEVEEIQNQG CKFPRISNGR GDLTKIGQKG EDQYQEDEKD GEVKRGITEI GDGGGSGGGG  60
GVARLYGWPS SRIVRVSRAS GGKDRHSKVL TSKGLRDRRV RLSVTTAIQF YDLQDRLGYD  120
QPSKAVEWLL KAASVSINEL PSINTSFPET PNQLSSSTRS SPPGTETLDE QQQHHVSLSR  180
SACSSTSDTS RGSGLSLSRS ESRVKARERA RERRTEKEKE REEESRTPPN HTNVSPISQS  240
SFTELLAGGI NHTNRAPHQF SSAPMDYFIS PSSSRIHPFS EQIQTRNTQI SPFIVPGDHH  300
QELQQFSFIP NHLIPVTAGG GGGGGSDYNL NFTISSSGGL DAFNGGTLQS NSQSLLPHIQ  360
KLSPVDGSSL PFFVGTAAPN SAPVESHHHQ FPAGLDGRLQ LCYGGGGGGN SDQKGGGKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2387141155Putative transcription factor PCF6
5zkt_B2e-2387141155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090971.11e-172LOW QUALITY PROTEIN: transcription factor TCP2-like
SwissprotQ93V436e-75TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A2R6QAJ40.0A0A2R6QAJ4_ACTCH; Transcription factor like
STRINGVIT_10s0003g03910.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]