PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA91G00006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 307aa    MW: 34611.8 Da    PI: 9.8268
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA91G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-1893142155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  AA91G00006  93 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 142
                 78*******************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1693151IPR016177DNA-binding domain
PfamPF008471.6E-993142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-1794150IPR001471AP2/ERF domain
SMARTSM003802.4E-3094156IPR001471AP2/ERF domain
CDDcd000185.09E-1294152No hitNo description
PROSITE profilePS5103217.7894150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009658Biological Processchloroplast organization
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSDLNLTIFS TFNHQDANNN NQEDNSTQSL NVKDRFIAFE ILKRDGEDTS PPPPLPSQAL  60
PAVESEWLNL SCLEKNKEKI VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  120
GGFDTAYAAA RAYDRAAIKF RGLDADINFE VDDYRLDIEK MKNLNKVEFV QTLRRESASF  180
GRGSSKYKSL NALHKYTQFN THQNQFHLFQ TRAWDAAAIK RNGLVKGEGV MKFGTHIKEN  240
KDLELSLGMS SSSSSSSENI RLTTSNRSGI GFLGKQTSMY LPVAASSGFP FITMATSTSM  300
SSSCFDP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00075ChIP-chipTransfer from AT3G54990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA91G00006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427236.11e-114PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV681e-102SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLD7LUZ71e-108D7LUZ7_ARALL; Uncharacterized protein
STRINGXP_010427236.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.12e-98AP2 family protein
Publications ? help Back to Top
  1. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]