PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 231aa    MW: 25462.1 Da    PI: 8.2022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00071genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-2096130135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  AA8G00071  96 CTNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 130
                ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-1790142IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.92993126IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-1393131No hitNo description
Gene3DG3DSA:3.30.50.106.8E-1794131IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.60E-1395127No hitNo description
PfamPF003205.8E-1896130IPR000679Zinc finger, GATA-type
PROSITE patternPS00344096121IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTQGQYCHYC GKFHHHNHNC CFQNGVVFSG NSDIDYYDSS SSAVDCTLSL GTPSTRRNTT  60
TCKSIPKTSP YNNVVPFSVN RVKSNGGGDI LLARRCTNCD TTSTPLWRNG PRGPKSLCNA  120
CGIRFKKEER KTTSCTTVTD VSNVVDIGGG PTLITADQYG HHSSYSYHNA TENGSNYLTN  180
EIRFMDLYGG VNGAGEYYQR DPVNGVNGVP FNSWRLNVAD KTTTLVYDFT R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00071
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566939.15e-65GATA type zinc finger transcription factor family protein
SwissprotQ8LC794e-66GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A078I7W83e-63A0A078I7W8_BRANA; BnaA07g12520D protein
TrEMBLA0A178VHP53e-63A0A178VHP5_ARATH; MNP
TrEMBLA0A3P6AW483e-63A0A3P6AW48_BRACM; Uncharacterized protein
TrEMBLM4D6H13e-63M4D6H1_BRARP; Uncharacterized protein
STRINGAT3G50870.12e-64(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-57GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]