PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TALE
Protein Properties Length: 575aa    MW: 65603.9 Da    PI: 6.9232
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-093473841954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  AA87G00056 347 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 384
                 554459******************************88 PP

2BELL72.57.1e-24212274172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e++elqk+k+kL+s+lee+++rY          +++Fe+++g+g+a++Yt+lA +a+SrhFrcLkd i++qi
  AA87G00056 212 EFMELQKRKSKLISMLEELKRRYA---------VAAFETAVGIGAAEIYTALAARAMSRHFRCLKDGIVSQI 274
                 679********************5.........99************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075263.6E-32136270IPR006563POX domain
SMARTSM005742.3E-46142272IPR006563POX domain
PROSITE profilePS5007112.034325388IPR001356Homeobox domain
CDDcd000869.99E-11328389No hitNo description
SMARTSM003894.5E-9328392IPR001356Homeobox domain
SuperFamilySSF466892.61E-17329396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27331395IPR009057Homeodomain-like
PfamPF059207.5E-18345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MTRDHHHQFY GHHHHHQQQQ MMNQIQGFDE ANHHYFGSNT NMGMMIDFSK QQHHHNENLL  60
MVNNDVDHSH HHQNQNQRQS QGLSLSLSSS NPTSINLQFQ QQEGYSGKST QSQNLQHSHQ  120
VMMMMMMNNN HHQFQIGSSK YLSPTQELLS EFCSLGVKQS DEEVMKLKKK IQKAKQHQDE  180
DDDDDHHHHD NHHDNYASTS SKKHVPPLHS LEFMELQKRK SKLISMLEEL KRRYAVAAFE  240
TAVGIGAAEI YTALAARAMS RHFRCLKDGI VSQIQETSQA LGEKEDQDNN RGVSIAPRGE  300
TPRLKLLDQA LRQQKSFRQM SLVDAHPWRP QRGLPERAVT ALRAWLFEHF LHPYPSDVDK  360
HILARQTGLS RSQVSNWFIN ARVRLWKPMI EEMYCEETRI DQDHINHHNH DHNKNDDGSI  420
SILNPMINID SKPDHNQLIR IEPESLSSIV TNPTTKINHK NDLNQGAATT SFGSTFDFSL  480
YGNQAVTYAG EREGTTRGVS LTLGLQRNDG NGGVSLAFSP VTVGSQGGAL FYGREHMEDC  540
QQGSVEYGAS MLDGDQSQNL PYRNLMGAQL LHDIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15334392563Homeobox protein Meis2
3k2a_B2e-15334392563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405354.10.0hypothetical protein EUTSA_v10027690mg
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLE4MWG90.0E4MWG9_EUTHA; mRNA, clone: RTFL01-17-O06
TrEMBLV4LWA40.0V4LWA4_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.7__3270__AT5G41410.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein