PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family RAV
Protein Properties Length: 354aa    MW: 39774.6 Da    PI: 9.8029
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00360genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.3e-1360108155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a  +++g
  AA65G00360  60 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVHRFRG 108
                 89****9888.8*********3.....5**********99***********9998 PP

2B3986.1e-31191295199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+ tpsdv+k++rlv+pk++ae+h      ++++ ++  l +ed +g++W+++++y+++s++yvltkGW++Fvk+ +L +gD+v F++++ ++++l+
  AA65G00360 191 FEKTVTPSDVGKLNRLVIPKHHAEKHfplpsnSNVSVKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKERNLTAGDVVSFSRSNGQDQQLY 289
                 99***************************99977777999*************************************************9877999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 +++ +k
  AA65G00360 290 IGWKSK 295
                 999776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-2660118No hitNo description
SuperFamilySSF541712.55E-1760117IPR016177DNA-binding domain
PfamPF008475.1E-860108IPR001471AP2/ERF domain
SMARTSM003801.6E-2761122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2061117IPR001471AP2/ERF domain
PROSITE profilePS5103220.19261116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.9E-39184296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-31188293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-26190283No hitNo description
PfamPF023625.7E-28191295IPR003340B3 DNA binding domain
SMARTSM010191.2E-24191296IPR003340B3 DNA binding domain
PROSITE profilePS5086313.972191296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDVSSVDEST TSTDSIYLTP AKIPAPVRPS MKLYRMGSGS SVVVDLENGV EAESRKLPSS  60
KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAVHRFRGRD AVTNFKDALI  120
SVDDDDSSVI DFLNSHSKSE IVDMLRKHTY NEELEQSKRR RNGKTMKTTT GTTSFLDNQN  180
DVVFRSAEIL FEKTVTPSDV GKLNRLVIPK HHAEKHFPLP SNSNVSVKGL LLNFEDVTGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKERNL TAGDVVSFSR SNGQDQQLYI GWKSKTGSGQ  300
DMNRVVKLFG VNICSSSGGC KNDVVVNGGG FKRVINNESL VCNNNKKQRI FYAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-6918730110123DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417140.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLV4L6Y30.0V4L6Y3_EUTSA; Uncharacterized protein
STRINGXP_006417140.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-174related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]