PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00253
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 222aa    MW: 24388.9 Da    PI: 6.5726
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00253genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-39191191100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkCak+Cv+apyf++e+ + +fa++hk+FGasn +kll++lp+++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l+ lk
  AA61G00253  19 PCGACKFLRRKCAKGCVFAPYFCHEEgATHFAAIHKVFGASNASKLLSQLPTSDRREAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLEILK 117
                 7***********************9989*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  AA61G00253 118 QQ 119
                 97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.38518120IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3719117IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSSSSSSSGS GFGSGSGSPC GACKFLRRKC AKGCVFAPYF CHEEGATHFA AIHKVFGASN  60
ASKLLSQLPT SDRREAAITI SYEAQARLQD PIYGCVSHIF ALQQQVVNLQ AQLEILKQQA  120
SQSMILADSQ SSQTPNYQNL QEHQNLHNQT HLVYQTGSGC PMTGSYYTEN SSGRGEDQYS  180
SVSTMEEFSM YSDLEQHLNT FNHQEHHLKD LQATTFGYIS FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37141146105LOB family transfactor Ramosa2.1
5ly0_B1e-37141146105LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00253
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191378.13e-99lateral organ boundaries-domain 29
SwissprotQ9M2J71e-100LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A178VM676e-98A0A178VM67_ARATH; LBD29
STRINGBostr.20903s0070.1.p1e-99(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-84lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]