PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00285
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 216aa    MW: 24820.9 Da    PI: 9.4928
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00285genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17100149155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  AA60G00285 100 SNYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAYAAARAYDRAAIKFRG 149
                 57*******************......44************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-16100157IPR016177DNA-binding domain
PfamPF008473.9E-10100149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17101156IPR001471AP2/ERF domain
PROSITE profilePS5103217.411101157IPR001471AP2/ERF domain
CDDcd000184.06E-12101156No hitNo description
SMARTSM003807.2E-31101163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLDLNLRLIS SNHNKDEEDC KVPISIFLEP QSNHSSSHSF ISFEILKKYQ NDENALLLPP  60
PPPPLPPACL VGESGEWLNL WSKEEKVVKK SRRGPRSRSS NYRGVTFYRR TGRWESHIWD  120
SGKQVYLGGF DTAYAAARAY DRAAIKFRGT QADINFVVDD YNQDIEKMNN LSKEEFVQSL  180
RKESASLARN GSKYKGLTLS KCTQFKNHHQ IHQFNI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00285
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505591.18e-74PREDICTED: AP2-like ethylene-responsive transcription factor SNZ
SwissprotQ6PV676e-71SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
TrEMBLA0A1J3FP723e-75A0A1J3FP72_NOCCA; AP2-like ethylene-responsive transcription factor SNZ
STRINGCagra.0716s0040.1.p4e-75(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.18e-59AP2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li W,Wang T,Zhang Y,Li Y
    Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(1): p. 175-94
    [PMID:26466661]
  4. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]