PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00186
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 169aa    MW: 20327.8 Da    PI: 9.1551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.23.3e-3342141199
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k ltpsdv+k++rlv+pk++ae++  +  +e+  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ ++++++++++r
  AA60G00186  42 FEKPLTPSDVGKLNRLVIPKQHAERYfPLAAAEGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRADGGRFFIGWRR 140
                 99*************************77888999*************************************************88779999******9 PP

                 S CS
          B3  99 k 99 
                 +
  AA60G00186 141 R 141
                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-4037143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3040140IPR015300DNA-binding pseudobarrel domain
CDDcd100179.85E-2841131No hitNo description
PROSITE profilePS5086314.7242142IPR003340B3 DNA binding domain
SMARTSM010199.6E-2542142IPR003340B3 DNA binding domain
PfamPF023621.6E-3142141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSINQYTNEF HYHSLMWQQQ QQHQQNQHYH QNDTVLEKEA LFEKPLTPSD VGKLNRLVIP  60
KQHAERYFPL AAAEGLLLCF EDEEGKPWRF RYSYWNSSQS YVLTKGWSRY VKEKHLDAGD  120
VVLFHRHRAD GGRFFIGWRR RDAPISTHHN ASHLQYYPHS GIYLNFKFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-473914311119DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746176.13e-84PREDICTED: B3 domain-containing protein At2g36080-like
RefseqXP_013690753.12e-83PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ29e-84Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A087H3011e-83A0A087H301_ARAAL; Uncharacterized protein
STRINGBra017262.1-P2e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-83B3 family protein