PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00085
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 201aa    MW: 22147.9 Da    PI: 10.0028
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00085genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1096.9e-34401427105
         TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg......kaaksaaks 97 
                  ++++hTkv+gR RRvR++a+ aar+F+L++eLG+ +d++tieWLl+qa+++i+ +tg+++++++    + +s  +++s+s ++      +     +++
  AA60G00085  40 VSKDRHTKVNGRSRRVRMPALAAARIFQLTRELGHRSDGETIEWLLRQAEASIITATGSGTNPSEPIstSIGSATVNSSKSAEPmmyamvA----PQNQ 134
                 589********************************************************99999555432222222222222224533331....3222 PP

         TCP  98 kksqksaa 105
                  +sq +++
  AA60G00085 135 AQSQLQTQ 142
                 22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-2940140IPR005333Transcription factor, TCP
PROSITE profilePS5136925.6154195IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAIHKFSPTD SNLNTIPPES HPQTQISVAR KSSGRRVSAV SKDRHTKVNG RSRRVRMPAL  60
AAARIFQLTR ELGHRSDGET IEWLLRQAEA SIITATGSGT NPSEPISTSI GSATVNSSKS  120
AEPMMYAMVA PQNQAQSQLQ TQEQLSHSLP ICQLDLSQSI GIHYPVNGYS HMPFTALLLQ  180
PMTTAETESE ALEDRRRRHH N
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410877.21e-74transcription factor TCP11
SwissprotQ9SJK77e-53TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A1J3JRI91e-77A0A1J3JRI9_NOCCA; Transcription factor TCP11
STRINGXP_006410877.15e-74(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.11e-52TCP family protein