PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 259aa    MW: 28215 Da    PI: 10.0771
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.27.5e-31431476101
         TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas....nsssg......kaak 92 
                 +r+++ h kv+gR+ R+R++a+ca r+F+L++ LG+++d++ti WLlq a+pai+e+tgt  ++a+++  + + + +++s    +   +      ++++
  AA55G00056  43 RRSKDGHIKVEGRGSRIRIPADCALRIFQLTRDLGHKTDGETIRWLLQRAEPAIIEATGTRPIPATAVviNGNLEIQTGSppplE---SnggsgeRKKR 138
                 79**********************************************************7777755554222222222233322...02333232222 PP

         TCP  93 saakskksq 101
                 + +k++k +
  AA55G00056 139 KRTKNEKGK 147
                 222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.1E-2445139IPR005333Transcription factor, TCP
PROSITE profilePS5136922.6194599IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MESTQEGKKI RKIDEIVVLA QDFVEPSSLP VEFLQPMNSS LNRRSKDGHI KVEGRGSRIR  60
IPADCALRIF QLTRDLGHKT DGETIRWLLQ RAEPAIIEAT GTRPIPATAV VINGNLEIQT  120
GSPPPLESNG GSGERKKRKR TKNEKGKNSL TSGLAPITAS DSGVNVNTQN LMPFGPVGEP  180
MVRPNESGQM WAIPTVDTTP FVNDATKPVS SYVSDASTVN SIMSTNGTTI PTLKDFSLKI  240
YDKKERKFLG SSENTSPKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139RKKRKR
2135140KKRKRT
3135142KKRKRTKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442701.19e-78PREDICTED: transcription factor TCP19-like
RefseqXP_013614476.14e-78PREDICTED: transcription factor TCP19
RefseqXP_013676320.14e-78transcription factor TCP19
RefseqXP_022551734.14e-78transcription factor TCP19
SwissprotQ9LT894e-75TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A087GA984e-82A0A087GA98_ARAAL; Uncharacterized protein
STRINGA0A087GA987e-83(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.29e-74TCP family protein