PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00084
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 294aa    MW: 32979.6 Da    PI: 6.1442
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00084genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20127176255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+g
  AA54G00084 127 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFETAEEAALAYDRAAYKLRG 176
                 59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-34126186No hitNo description
PROSITE profilePS5103223.433127184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32127185IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-23127185IPR016177DNA-binding domain
SMARTSM003801.3E-38127190IPR001471AP2/ERF domain
PRINTSPR003673.3E-11128139IPR001471AP2/ERF domain
PfamPF008474.2E-14128176IPR001471AP2/ERF domain
PRINTSPR003673.3E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGDFFNGGEL MEALQPFYKS ASTSTQQNAF AFASQTNQPS SSYNPYYQNN ISESMTHPSS  60
FGSDLQQTES LQFNYQQIQN QFHYQTQNQT GLIYPNQYNG SMLNFIEPDL NPGLDPVPDP  120
VPKPTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFETA EEAALAYDRA AYKLRGDSAR  180
LNFPALKYQT SSAPGPLQAA VDAKVEAILA EPKNQPSKAE KPTRKRSSAT RSRVRAVETL  240
PRQHSGSGES DGSGSVLSDP MVGEMCEETP MPWNDNFMLG KCPSYEIDWD SILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22126184160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746354.11e-119PREDICTED: ethylene-responsive transcription factor ERF055-like
SwissprotQ9SKW51e-112ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A078IDT31e-117A0A078IDT3_BRANA; BnaAnng09570D protein
TrEMBLM4FH031e-117M4FH03_BRARP; Uncharacterized protein
STRINGBra040381.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-89ERF family protein