PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TALE
Protein Properties Length: 435aa    MW: 48522.4 Da    PI: 6.7661
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01430genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.1e-063703992655
                 -HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  26 saeereeLAkklgLterqVkvWFqNrRake 55 
                 +++++  LA+++gL+++q+ +WF N+R ++
  AA53G01430 370 QEQQKLALAESTGLDQKQINNWFINQRKRH 399
                 5789999********************885 PP

2ELK40.84.6e-14287308122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  AA53G01430 287 ELKGQLLRKYSGYLGSLKQEFM 308
                 9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-18141185IPR005540KNOX1
PfamPF037904.7E-21143181IPR005540KNOX1
SMARTSM012561.1E-23192243IPR005541KNOX2
PfamPF037911.2E-19196241IPR005541KNOX2
PfamPF037897.5E-11287308IPR005539ELK domain
PROSITE profilePS5121311.174287307IPR005539ELK domain
SMARTSM011882.8E-8287308IPR005539ELK domain
SMARTSM003898.6E-5309406IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-26312338IPR009057Homeodomain-like
PROSITE profilePS500719.75371402IPR001356Homeobox domain
PfamPF059203.0E-9371398IPR008422Homeobox KN domain
SuperFamilySSF466898.98E-10371416IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-26371404IPR009057Homeodomain-like
CDDcd000862.01E-7371403No hitNo description
PROSITE patternPS000270377400IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MESGSNSTCC PMAFAGDNSD GPMCPMMMMM MPLMTSHQHQ QQQHHHGHDH HQHQEHDGYA  60
YQSHPQQNSL FLRSPPSPSP SSPSPPQESS KRKVEVLFSS PSSSRSRVAS SFMEIHHQND  120
IGGAGGGGIN INPCSSSSSS ASVKAKIMAH PHYHRLLASY VNCQKVGAPA EVVERLEEAC  180
ASAAAAAASM GATGCLGDDP GLDQFMEAYC EMLAKYEQEL SKPFKEAMLF LQRVDSQFKA  240
LSLSSPSSLS GYGDASIDRN NNNNNVSSEE EVDMNNDLID PQAEDRELKG QLLRKYSGYL  300
GSLKQEFMKK RKKGKLPKEA RQQLLDWWSR HYKWPYPSVT SSSSSSSTYL TNPIQDELIH  360
LIMGKITVVQ EQQKLALAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV MDATHPHHYF  420
IDNVLGNPFP VDHML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302311LKQEFMKKRK
2308312KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302988.10.0homeobox protein SHOOT MERISTEMLESS
SwissprotQ388741e-169STM_ARATH; Homeobox protein SHOOT MERISTEMLESS
TrEMBLD4NZH60.0D4NZH6_BRANA; SHOOT MERISTEMLESS
STRINGBra027050.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-147KNOX/ELK homeobox transcription factor