PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00212
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 164aa    MW: 18337.8 Da    PI: 9.0055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00212genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-182574255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  AA46G00212 25 LYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 74
                59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-272484No hitNo description
SMARTSM003801.2E-372588IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-222583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-312583IPR001471AP2/ERF domain
PROSITE profilePS5103222.8662582IPR001471AP2/ERF domain
PfamPF008472.4E-122674IPR001471AP2/ERF domain
PRINTSPR003674.2E-92637IPR001471AP2/ERF domain
PRINTSPR003674.2E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
METATATTTT TVTSPAMGSR KREKLYKGIR MRKWGKWVAE IREPNKRSRI WLGSYSTPEA  60
AARAYDTAVF YLRGPSARLN FPELMDEIGG VRGGDLSAAY IRRKAAEVGA QVDATAVKIE  120
GELGFRRCNG FGLLDRVDLN KIPDPDPDPE LMGEVDDNDE WVRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-162482463ATERF1
3gcc_A6e-162482463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138483.13e-60PREDICTED: ethylene-responsive transcription factor RAP2-10-like
RefseqXP_009140458.12e-60PREDICTED: ethylene-responsive transcription factor ERF008
SwissprotO221748e-62ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A087GS994e-62A0A087GS99_ARAAL; Uncharacterized protein
STRINGBra017811.1-P9e-60(Brassica rapa)
STRINGBra032173.1-P5e-60(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-62DREB and EAR motif protein 3