PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 288aa    MW: 32756.7 Da    PI: 5.8155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-211564255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a++kl+g
  AA46G00120 15 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAAMAYDQAALKLRG 64
                59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-341472No hitNo description
PROSITE profilePS5103223.5251572IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-231572IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-331573IPR001471AP2/ERF domain
SMARTSM003807.2E-391578IPR001471AP2/ERF domain
PfamPF008471.5E-141664IPR001471AP2/ERF domain
PRINTSPR003672.7E-111627IPR001471AP2/ERF domain
PRINTSPR003672.7E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKLISSSHSS KTQKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFETAEE AAMAYDQAAL  60
KLRGDTAKLN FPQIKQKDFK PLHSSVESKL QAIISKNKTE EKICSVFDKT ELENSDKNSP  120
RSDVKYFSDD SQMFSSSYEL GIRLSDFLGS ELMKFQCSVS EKTEYQETPG FCGNSTRSNE  180
NLLLNESSNS EFGARILNFS DSELKDIGSF KNSTSLIKTE EICSVSAKTE HQETLGLFNN  240
LSKSNENSIL YDYKMGIGFL NFSDSEIGSF ELEKFPSIEI DWDAINKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-231472160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179810.13e-54ethylene-responsive transcription factor ERF056
SwissprotQ9SIE44e-56ERF56_ARATH; Ethylene-responsive transcription factor ERF056
STRINGAT2G22200.11e-53(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.13e-42ERF family protein